Amos Zamir graduated!
Congratulations to Amos for submitting his Ph.D. dissertation today! Amos developing computational methods to characterize intermediate...
top of page
Search
Oct 22
Perspective on bioimage data sharing and interdisciplinary collaboration is out!
In a new Perspective we propose ‘datathons’ to bring bioimage data 'producers' and 'consumers' together to ‘crack tough nuts’ and solve...
Oct 5
Nitsan Elmalam graduated!
Congratulations to Nitsan for completing his M.Sc .! Nitsan developed a method that "injects" cellular context (e.g., mitosis stage, cell...
Sep 4
IVF embryo implantation vs. ranking - paper is published!
We established that optimizing a machine learning model to predict in vitro fertilization (IVF) embryo implantation success is not an...
Aug 29
DISCOVER visual interpretability paper is published!
DISCOVER is a generative model for visual interpretability of image-based classification models. DISCOVER’s disentanglement module...
Aug 24
Alon Shpigler graduated!
Congratulations to Alon for completing his Ph.D.! Alon adopted concepts from anomaly detection to improve representations of high-content...
Aug 12
Grant awarded from the Wellcome Trust!
Our proposal "Multimodal, multiscale functional tissue state imaging" led by Maddy Parsons was selected for funding for the Bioimaging...
Aug 11
Sarit Hollander graduated!
Congratulations to Sarit for completing her M.Sc.! Sarit developed a computational method to measure intracellular adhesion-mediated...
Aug 8
Our Comment on visual interpretability of bioimaging deep learning models is out!
Deep learning's success in bioimaging comes at the expense of lack of biologically meaningful interpretations. In a new Comment Oded and...
Aug 4
Grant awarded from the BSF!
Our proposal "Data-driven spatiotemporal characterization of cell death" with Mike Overholtzer was selected for funding by the U...
Jun 26
Quantifying spatiotemporal inter-adhesion communication preprint @bioRxiv!
We repurposed micropillar-arrays (usually used to measure traction forces) to quantify spatiotemporal inter-adhesion communication! This...
Jun 9
Anomaly-based representation for image-based cell profiling preprint @bioRxiv!
We adopted concepts from anomaly detection to improve representations of high-content image-based phenotypic profiling while maintaining...
Jun 5
Our Review on in silico labeling is out!
In silico labeling as the computational cross-modality image translation where the output modality is a subcellular marker that is not...
Jun 1
Cell shape --> protein expression preprint @bioRxiv!
We systematically analyzed the interplay between single cell shape, single cell protein expression, and tissue state in human disease...
May 8
Lab retreat!
Relaxing annual retreat at Haifa!
Apr 10
Intercellular communication communities paper published!
We identified an intermediate spatial scale of intercellular communication: recurrent transient communities (“hotspots”) that form over...
Apr 10
AI Flexes Its Muscles!
Nice writeup on our recent joint paper with Ori Avinoam on machine learning inference of continuous single-cell state transitions 💫...
Mar 4
Our paper was featured on the cover!
Our machine learning inference of continuous single-cell state transitions was featured on the cover of Molecular Systems Biology! Joint...
Mar 1
Collaborative perspective on multimodal bioimaging!
Multimodal bioimaging Perspective by Maddy Parsons (Kings College London) and colleagues is out! Leor Rose and Assaf contributed to the...
Feb 8
(Hebrew) interview about our IVF siblings paper!
אחים עובריים תורמים לחיזוי ההצלחה של הפריה חוץ גופית https://www.bgu.ac.il/articles/fetal-siblings/ מחקר של נעם צוקרמן בשיתוף עם עודד...
bottom of page