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Our Team

Assaf Zaritsky

Assaf Zaritsky

Principal Investigator

Computational cell dynamics

Yuval Tamir

Yuval Tamir

Ph.D. student

Yuval is investigating the interplay between cell shape and its intracellular molecular composition and organization

Lion Ben Nedava

Lion Ben Nedava

Ph.D. student

Lion is developing a method for visual interpretation of image-to-image transformation models and applying it to in-silico organelle localization.

Nitai Halle

Nitai Halle

M.Sc. student

Nitai is developing a method to use anomalous cancer cells as an anchor to decipher tumor-microenvironment interactions from multiplexed single cell spatial proteomics data

Mark Oulitin

Mark Oulitin

M.Sc. student

Mark is developing methods to analyze spatial metallomics data and apply them to triple negative breast cancer patient samples

Orit Kliper Gross

Orit Kliper Gross

Research Associate

Orit is mentoring students in multiple diverse projects, advising on computational and technical issues, formulating challenging research questions and keeping contact with collaborators

Esraa Nsasra

Esraa Nsasra

Ph.D. student

Esraa is developing methods for quantitative spatiotemporal characterization of heterogeneous collective cell death

Leor Ariel Rose

Leor Ariel Rose

Ph.D. student

Leor is developing methods for analysis and integration of multimodal bioimaging data.

Noy Salomon

Noy Salomon

M.Sc. student

Noy is investigating the coupling between single cell and collective signaling dynamics

Reut Mealem

Reut Mealem

M.Sc. Student

Reut is developing methods to analyze fluorescence lifetime imaging microscopy (FLIM) in the context of triple negative breast cancer patient samples

Oded Rotem

Oded Rotem

Ph.D. student

Oded is developing methods for visual interpretability of deep learning models and applying them to biomedical images

Guy Shpringer

Guy Shpringer

Ph.D. student

Guy is developing network-based representations to measure cell biological state transitions for intracellular and for tissue organization

Ariel Bereslavsky

Ariel Bereslavsky

M.Sc. student

Ariel is developing data-driven structural inference of biomolecular complexes in cells from super resolution microscopy data.

Leah Wachtfogel

Leah Wachtfogel

M.Sc. student

Leah is investigating the brain vasculature structure in Glioblastoma (GBM) patients data

Gad Miller

Gad Miller

M.Sc. Student

Gad is developing a method for local assessment of the confidence of image-to-image transformation models and applying it to in-silico organelle localization

Alumni

Assaf Nahum, M.Sc. 2021, Quantifying the dynamics of long-range cell-cell mechanical communication.

Itay Erlich, Ph.D. 2021 (HUJI), Methods for predicting in vitro fertilization (IVF) embryo developmental potential by machine learning algorithms of video streaming data.

Noam Tzukerman, M.Sc., 2022, Using unlabeled information of embryo siblings from the same cohort cycle to enhance in vitro fertilization implantation prediction.

Kathrine (Katya) Smoliansky, M.Sc., 2022, Applying in silico labeling via transfer learning as a tool to dissect organelle-organelle spatial dependencies.

Yishaia Zabary, M.Sc., 2022, Bottom up modular characterization of sparse spatial biological networks: applications in cell death and brain vasculature.

Amit Shakarchy, M.Sc., 2023, Machine learning inference of continuous single-cell state transitions during myoblast differentiation and fusion.

Naor Kolet, M.Sc., 2023, Anomaly detection for sensitive hits identification in high-content image-based phenotypic screens.

Saar Ben David, M.Sc., 2023, Formation of recurring transient Ca2+-based intercellular communities in the developing Drosophila lymph gland.

Sarit Hollander, M.Sc., 2024, Spatiotemporal analysis of F-actin polymerization with micropillar arrays reveals synchronization between adhesion sites.

Alon Shpigler, Ph.D. 2024, Deep neural networks interpretation and applications for
ultrasound and cell profiling.

Nitsan Elmalam, M.Sc. 2024, Cell-context dependent in silico organelle localization in label-free microscopy images

Amos Zamir, Ph.D. 2024, Bridging spatiotemporal scales in multicellular organization and information processing

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